SOLiD™ System Color Space Mapping Tool (mapreads)

The SOLiD™ System Color Space Mapping Tool (map reads) is a mapping device for SOLiD™ framework sequencing peruses. The contribution for the device is a reference genome in fast design and a SOLiD™ framework read a document in .csfasta arrange. The bundle will discover every one of the hits (up to first Z hits with the client indicated Z-parameter) for each read and the reference succession permitting up to N bungles. The mapping is performed in shading space with the interpretation of the reference succession done on-the-fly. The client has the choice of considering substantial contiguous confounds either 1 or 2. The bundle likewise enables the client to use quality qualities in the mapping strategy and furthermore underpins the utilization of IUB codes to speak to known SNPs in the genome.

Effectively Analyze Results for Numerous Applications

The suite of programming and apparatuses inside SOLiD® Software gives simple to-utilize ventures to an end client from working the instrument, programmed information investigation, to incorporating tertiary information examination bundles (Figure 1). The SOLiD(R) Instrument Control Software (ICS- – Figure 2) gives a mechanized task and information investigation. It has a simple to-utilize realistic UI and gives a guided wizard to set up the trial run. The SOLiD. Experiment Tracking System (SETS- – Figure 3) is an electronic coordinated application that empowers information investigation setting, the re-examination of information, constant remote observing, and perception of investigation reports. All product applications are given as a component of the SOLiD® System notwithstanding a register group with the adequate capacity to help constant information investigation on the instrument.

Computerize and Simplify Data Analysis

The SOLiD® BioScope™ Software gives an order line and basic web interface for running application-explicit arrangement investigation apparatuses. The BioScope™ system (Figure 4) empowers the client to perform off-instrument auxiliary and tertiary investigations, and it permits configurable bioinformatics work processes for resequencing (mapping, SNP discovering (Bayes), Human duplicate number varieties, reversals, little indels, substantial indels), ChIP-Seq, and entire transcriptome examination (mapping, combination/grafting, checking, UCSC WIG Files creation). Results will be in GFF v3 and BAM groups. The subsequent business standard documents from BioScope™ can be utilized with outsider representation and investigation programming apparatuses.

Most recent Software:

This product is being authorized to you under the OSI agreeable GNU Public License (GPL). If you don’t mind read the permit completely and guarantee that you comprehend the authorizing conditions for use. Your utilization of this product shows your acknowledgment of this authorizing assertion. Tap on this connects to peruse the authorizing understanding.

Support

This apparatus is being discharged as “unsupported programming” by Applied Biosystems.

Documentation

Client manual for this bundle

Programming Download

This product is dispersed as source code. The present form of the SOLiD™ System Analysis Pipeline Tool (map reads) can be downloaded here.

The outlines related to the bundle can be downloaded here.

Test Data Download

E. Coli test information for this product device can be downloaded here.

Human example information for this product device can be downloaded here.

Key Product Features:

Programmed information handling

Adaptable calculation

Programmed information fare to disconnected group

Create an investigation result in base space

The SOLiD Analyzer comes ‘preconfigured’ with ICS and SETS. There are extra information investigation apparatuses accessible from the SOLiD™ Software Community.

If it’s not too much trouble download the Software to a DVD/CD, and utilize the DVD/CD to redesign SOLiD™ Software. On the off chance that a USB drive is utilized to download the product, it would be ideal if you reformat the USB before utilizing it or first sweep the USB drive on a PC with hostile to infection program to ensure it’s sans infection. At that point utilize the USB drive on the instrument PC.

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